5T4I

A Novel domain in human EXOG converts apoptotic endonuclease to DNA-repair enzyme


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.39 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 5T4I

Classification: HYDROLASE / DNA

Total Structure Weight: 83605.40


Macromolecule Entities
Molecule Chains Length Organism Details
Nuclease EXOG, mitochondrial A, B 317 Homo sapiens EC#: 3.1.30 IUBMB
Fragment: UNP residues 59-358
Mutation: H140A
Gene Name(s): EXOG Gene View ENDOGL1 ENDOGL2 ENGL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(P*CP*TP*GP*AP*CP*GP*TP*GP*C)-3') C, E 9 DNA launch vector pde-gfp2
DNA (5'-D(*GP*CP*AP*CP*GP*TP*CP*AP*G)-3') D, F 9 DNA launch vector pde-gfp2

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

A, B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.39 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.191
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 73.51 α = 90.00
b = 79.72 β = 90.00
c = 138.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-08-29
  • Released Date: 2017-05-17
  • Deposition author(s): Szymanski, M.R., Yin, W.Y.

Revision History

  • Version 1_0: 2017-05-17

    Type: Initial release