5T3A

Maedi-Visna virus (MVV) integrase CCD-CTD (residues 60-275)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.179 
  • R-Value Observed: 0.182 

wwPDB Validation   3D Report Full Report


This is version 2.0 of the entry. See complete history


Literature

A supramolecular assembly mediates lentiviral DNA integration.

Ballandras-Colas, A.Maskell, D.P.Serrao, E.Locke, J.Swuec, P.Jonsson, S.R.Kotecha, A.Cook, N.J.Pye, V.E.Taylor, I.A.Andresdottir, V.Engelman, A.N.Costa, A.Cherepanov, P.

(2017) Science 355: 93-95

  • DOI: https://doi.org/10.1126/science.aah7002
  • Primary Citation of Related Structures:  
    5LLJ, 5M0R, 5T3A, 7ZPP

  • PubMed Abstract: 

    Retroviral integrase (IN) functions within the intasome nucleoprotein complex to catalyze insertion of viral DNA into cellular chromatin. Using cryo-electron microscopy, we now visualize the functional maedi-visna lentivirus intasome at 4.9 angstrom resolution. The intasome comprises a homo-hexadecamer of IN with a tetramer-of-tetramers architecture featuring eight structurally distinct types of IN protomers supporting two catalytically competent subunits. The conserved intasomal core, previously observed in simpler retroviral systems, is formed between two IN tetramers, with a pair of C-terminal domains from flanking tetramers completing the synaptic interface. Our results explain how HIV-1 IN, which self-associates into higher-order multimers, can form a functional intasome, reconcile the bulk of early HIV-1 IN biochemical and structural data, and provide a lentiviral platform for design of HIV-1 IN inhibitors.


  • Organizational Affiliation

    Chromatin Structure and Mobile DNA, The Francis Crick Institute, London, NW1 1AT, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
integrase222Visna-maedi virusMutation(s): 0 
UniProt
Find proteins for P35956 (Maedi visna virus (strain KV1772))
Explore P35956 
Go to UniProtKB:  P35956
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP35956
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.179 
  • R-Value Observed: 0.182 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 78.05α = 90
b = 124.83β = 90
c = 62.38γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2017-01-18
    Type: Initial release
  • Version 2.0: 2024-01-17
    Changes: Atomic model, Data collection, Database references, Refinement description