5T1U

Aminomethyl-Derived Beta Secretase (BACE1) Inhibitors: Engaging Gly230 without an Anilide Functionality


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.187

Literature

Macromolecules
Sequence Display for 5T1U

Classification: HYDROLASE / HYDROLASE inhibitor

Total Structure Weight: 47325.22

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-secretase 1 A 415 Homo sapiens EC#: 3.4.23.46 IUBMB 4.3.1.23 IUBMB
Fragment: UNP residues 46-454
Gene Name(s): BACE1 Gene View BACE KIAA1149
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P6U
Query on P6U

A (4S)-4-[2,4-difluoro-5-({[1-(trifluoromethyl)cyclopropyl]amino}methyl)phenyl]- 4-methyl-5,6-dihydro-4H-1,3-thiazin-2-amine
C16 H18 F5 N3 S
XKONRMXLBXCJAM-AWEZNQCLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IOD
Query on IOD

A IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.187
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 102.50 α = 90.00
b = 102.50 β = 90.00
c = 171.69 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-08-22
  • Released Date: 2017-01-11
  • Deposition author(s): Parris, K.D., Vajdos, F.

Revision History

  • 2017-01-25
    Type: Database references