5T0U

CTCF ZnF2-7 and DNA complex structure


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.230

Literature

Macromolecules
Sequence Display for 5T0U

Classification: TRANSCRIPTION REGULATOR / DNA

Total Structure Weight: 70479.10


Macromolecule Entities
Molecule Chains Length Organism Details
Transcriptional repressor CTCF A, D 177 Homo sapiens Fragment: UNP residues 294-465
Gene Name(s): CTCF Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*CP*TP*CP*AP*CP*TP*AP*GP*CP*GP*CP*CP*CP*CP*CP*TP*GP*CP*TP*GP*GP*C)-3') B, E 23 Synthetic construct
DNA (5'-D(*GP*CP*CP*AP*GP*CP*AP*GP*GP*GP*GP*GP*CP*GP*CP*TP*AP*GP*TP*GP*AP*GP*G)-3') C, F 23 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.230
  • Space Group: P 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 101.63 α = 90.00
b = 40.96 β = 92.21
c = 106.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-08-16
  • Released Date: 2017-05-24
  • Deposition author(s): Hashimoto, H., Wang, D., Cheng, X.

Revision History

  • 2017-05-31
    Type: Database references
  • 2017-06-14
    Type: Database references