5SUP

Structure of mRNA export factors

Structural Biology Knowledgebase: 5SUP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 5SUP

Classification: HYDROLASE / RNA

Total Structure Weight: 159621.47


Macromolecule Entities
Molecule Chains Length Organism Details
ATP-dependent RNA helicase SUB2 A, B, C 390 Saccharomyces cerevisiae EC#: 3.6.4.13 IUBMB
Fragment: residues 61-446
Gene Name(s): SUB2 YDL084W
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RNA annealing protein YRA1 G, H, I 32 Saccharomyces cerevisiae Fragment: residues 200-226
Gene Name(s): YRA1 YDR381W D9481.2 D9509.1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') D, E, F 15 Synthetic construct

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B, C ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BEF
Query on BEF

A, B, C BERYLLIUM TRIFLUORIDE ION
Be F3
OGIAHMCCNXDTIE-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.219
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 99.35 α = 90.00
b = 99.35 β = 90.00
c = 247.47 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-08-03
  • Released Date: 2017-01-18
  • Deposition author(s): Ren, Y., Schmiege, P., Blobel, G.

Revision History

No revisions since initial release