5OY7

Structure of the 4_601_157 tetranucleosome (P1 form)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 5.77 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 5OY7

Classification: GENE REGULATION

Total Structure Weight: 827371.88


Macromolecule Entities
Molecule Chains Length Organism Details
Histone H2B 1.1 D, H, L..., P, T, X, b, fD, H, L, P, T, X, b, f 126 Xenopus laevis Mutation: S29T
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Histone H3 A, E, I..., M, Q, U, Y, cA, E, I, M, Q, U, Y, c 135 Xenopus laevis Mutation: G102A, G111A
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Histone H4 B, F, J..., N, R, V, Z, dB, F, J, N, R, V, Z, d 102 Xenopus laevis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Histone H2A C, G, K..., O, S, W, a, eC, G, K, O, S, W, a, e 130 Xenopus laevis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (619-MER) g 634 Synthetic construct
DNA (619-MER) h 628 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

C, G, K, O, S, W, a, e CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 5.77 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.219
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 66.62 α = 78.94
b = 161.46 β = 83.86
c = 227.91 γ = 83.74

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-09-07
  • Released Date: 2017-09-20
  • Deposition author(s): Ekundayo, B., Richmond, T.J., Schalch, T.

Revision History

  • Version 1_0: 2017-09-20

    Type: Initial release

  • Version 1_1: 2017-10-18

    Type: Database references