5OMX

X-ray Structure of the H2A-N38C Nucleosome Core Particle


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.32 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.222

Literature

Macromolecules
Sequence Display for 5OMX

Classification: DNA BINDING PROTEIN

Total Structure Weight: 200998.50


Macromolecule Entities
Molecule Chains Length Organism Details
Histone H3.2 A, E 135 Xenopus laevis Mutation: G102A, C110A
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Histone H4 B, F 103 Xenopus laevis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Histone H2A C, G 129 Xenopus laevis Mutation: N38C
Gene Name(s): hist1h2aj LOC494591
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Histone H2B 1.1 D, H 122 Xenopus laevis Mutation: S32T
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (147-MER) I 147 Homo sapiens
DNA (147-MER) J 147 Homo sapiens

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

E, I, J MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, C, E, G CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.32 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.222
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 106.75 α = 90.00
b = 182.58 β = 90.00
c = 109.64 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-08-02
  • Released Date: 2017-11-15
  • Deposition author(s): Frouws, T.D., Richmond, T.J.

Revision History

  • Version 1_0: 2017-11-15

    Type: Initial release