5ODG

Crystal structure of Smad3-MH1 bound to the GGCT site.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 5ODG

Classification: TRANSCRIPTION

Total Structure Weight: 40037.85


Macromolecule Entities
Molecule Chains Length Organism Details
Mothers against decapentaplegic homolog 3 A, B 128 Homo sapiens Fragment: MH1 domain, UNP residues 11-135
Gene Name(s): SMAD3 Gene View MADH3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(P*CP*AP*GP*GP*CP*TP*AP*GP*CP*CP*TP*GP*CP*A)-3') D, E 16 Homo sapiens

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.199
  • Space Group: I 41

Unit Cell:

Length (Å) Angle (°)
a = 104.99 α = 90.00
b = 104.99 β = 90.00
c = 72.49 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-07-05
  • Released Date: 2017-11-15
  • Deposition author(s): Kaczmarska, Z., Marquez, J.A., Macias, M.J.

Revision History

  • Version 1_0: 2017-11-15

    Type: Initial release