5ODF

NtMe polyamide in complex with 5'CGATGTACATCG3'- hairpin polyamides studies


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 10
  • Conformers Submitted: 10
  • Selection Criteria: Na

Literature

Macromolecules
Sequence Display for 5ODF

Classification: DNA BINDING PROTEIN

Total Structure Weight: 8405.22

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3') A, B 12 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CWN
Query on CWN

A NtMe polyamide
C58 H71 N20 O10 S
HKFXWRQIBKGGHN-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
DCZ
Query on DCZ
A, B DNA OH 5 prime terminus C9 H13 N3 O4 --

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 10
  • Conformers Submitted: 10
  • Selection Criteria: na

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-07-05
  • Released Date: 2017-12-20
  • Deposition author(s): Padroni, G., Parkinson, J., Burley, G.A.

Revision History

  • Version 1_0: 2017-12-20

    Type: Initial release