5O6G

Structures and dynamics of mesophilic variants from the homing endonuclease I-DmoI


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 5O6G

Classification: DNA BINDING PROTEIN

Total Structure Weight: 116789.38


Macromolecule Entities
Molecule Chains Length Organism Details
Homing endonuclease I-DmoI A, D, G 200 Desulfurococcus mucosus EC#: 3.1 IUBMB
Mutation: I52F, L95Q
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (25-MER) B, E, H 25 Synthetic construct
DNA (25-MER) C, F, I 25 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

A, D, G MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

G CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.177
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 107.28 α = 90.00
b = 70.50 β = 119.89
c = 107.15 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-06-06
  • Released Date: 2017-12-06
  • Deposition author(s): Molina, R., Marcaida, M.J.

Revision History

  • Version 1_0: 2017-12-06

    Type: Initial release