5O58

Structure of the inactive T.maritima PDE (TM1595) D80N D154N mutant with substrate 5'-pApG


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.158

Literature

Macromolecules
Sequence Display for 5O58

Classification: HYDROLASE

Total Structure Weight: 39987.00


Macromolecule Entities
Molecule Chains Length Organism Details
phosphodiesterase TM1595 A 338 Thermotoga maritima Mutation: D80N, D154N
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(P*AP*G)-3') B 2 Synthetic construct

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IPA
Query on IPA

A ISOPROPYL ALCOHOL
2-PROPANOL (Synonym)
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.158
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 70.37 α = 90.00
b = 88.34 β = 90.00
c = 124.27 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-06-01
  • Released Date: 2017-10-25
  • Deposition author(s): Witte, G., Drexler, D., Mueller, M.

Revision History

  • Version 1_0: 2017-10-25

    Type: Initial release

  • Version 1_1: 2017-11-15

    Type: Database references