5O1Y

Stucture of Nrd1 RNA binding domain in complex with RNA (GUAA)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.197

Literature

Macromolecules
Sequence Display for 5O1Y

Classification: TRANSCRIPTION

Total Structure Weight: 21619.69


Macromolecule Entities
Molecule Chains Length Organism Details
Protein NRD1 A 180 Saccharomyces cerevisiae Gene Name(s): NRD1 YNL251C N0868
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*GP*UP*AP*A)-3') B 4 Saccharomyces

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TRS
Query on TRS

B 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.197
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 64.94 α = 90.00
b = 64.94 β = 90.00
c = 158.39 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-05-19
  • Released Date: 2017-08-02
  • Deposition author(s): Franco-Echevarria, E., Perez-Canadillas, J.M., Gonzalez, B.

Revision History

No revisions since initial release