5NZY

Crystal structure of DNA cross-link repair protein 1A in complex with Cefotaxime


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.206

Literature

Macromolecules
Sequence Display for 5NZY

Classification: DNA BINDING PROTEIN

Total Structure Weight: 39891.69

Macromolecule Entities
Molecule Chains Length Organism Details
DNA cross-link repair 1A protein A 343 Homo sapiens Gene Name(s): DCLRE1A Gene View KIAA0086 SNM1 SNM1A
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CE3
Query on CE3

A (6R,7R)-3-(acetyloxymethyl)-7-[[(2Z)-2-(2- amino-1,3-thiazol-4-yl)-2-methoxyimino-ethanoyl]amino]- 8-oxo-5-thia-1-azabicyclo[4.2.0]oct-2-ene- 2-carboxylic acid
CEFOTAXIME (Synonym)
C16 H17 N5 O7 S2
GPRBEKHLDVQUJE-QSWIMTSFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

A NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.206
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 51.12 α = 90.00
b = 55.83 β = 90.00
c = 112.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-05-15
  • Released Date: 2017-06-14
  • Deposition author(s): Newman, J.A., Aitkenhead, H., Kupinska, K., Burgess-Brown, N.A., Talon, R., Krojer, T., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Gileadi, O.

Revision History

  • Version 1_0: 2017-06-14

    Type: Initial release

  • Version 1_1: 2017-08-30

    Type: Author supporting evidence