5NZD

The structure of the thermobifida fusca guanidine III riboswitch in space group P212121.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.220

Literature

Macromolecules
Sequence Display for 5NZD

Classification: RNA

Total Structure Weight: 27304.44

Macromolecule Entities
Molecule Chains Length Organism Details
guanidine III riboswitch A, B 41 Thermobifida fusca

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACT
Query on ACT

A, B ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CBV
Query on CBV
A, B RNA LINKING C9 H13 Br N3 O8 P C

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.01 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.220
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 49.46 α = 90.00
b = 64.61 β = 90.00
c = 84.29 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-05-13
  • Released Date: 2017-10-18
  • Deposition author(s): Huang, L., Wang, J., Lilley, D.M.J.

Revision History

  • Version 1_0: 2017-10-18

    Type: Initial release