5NM9

Crystal structure of the placozoa Trichoplax adhaerens Smad4-MH1 bound to the GGCGC site.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.43 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.221

Literature

Macromolecules
Sequence Display for 5NM9

Classification: TRANSCRIPTION

Total Structure Weight: 43138.81


Macromolecule Entities
Molecule Chains Length Organism Details
Mothers against decapentaplegic homolog A, B 143 Trichoplax adhaerens Fragment: MH1 domain, UNP residues 33-174
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(P*AP*TP*GP*CP*GP*GP*GP*CP*GP*CP*GP*CP*CP*CP*GP*CP*AP*T)-3') C, D 18 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.43 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.221
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 37.15 α = 90.00
b = 76.98 β = 90.00
c = 145.04 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-04-05
  • Released Date: 2017-11-15
  • Deposition author(s): Kaczmarska, Z., Freier, R., Marquez, J.A., Macias, M.J.

Revision History

  • Version 1_0: 2017-11-15

    Type: Initial release