5NJ8

Structural basis for aryl hydrocarbon receptor mediated gene activation


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.333
  • R-Value Work: 0.292

Literature

Macromolecules
Sequence Display for 5NJ8

Classification: TRANSCRIPTION

Total Structure Weight: 132649.77


Macromolecule Entities
Molecule Chains Length Organism Details
Aryl hydrocarbon receptor A, C 254 Homo sapiens Gene Name(s): AHR Gene View BHLHE76
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Aryl hydrocarbon receptor nuclear translocator B, D 267 Homo sapiens Details: internal deletion of 274-301
Gene Name(s): ARNT Gene View BHLHE2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*GP*TP*CP*AP*CP*GP*CP*AP*AP*CP*C)-3') E, G 12 Homo sapiens Dioxin response element
DNA (5'-D(*GP*GP*TP*TP*GP*CP*GP*TP*GP*AP*CP*C)-3') F, H 12 Homo sapiens Dioxin response element

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ER3
Query on ER3

A, B, C, D, E, G, H ERBIUM (III) ION
Er
JHFPQYFEJICGKC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

B ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.333
  • R-Value Work: 0.292
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 91.32 α = 90.00
b = 91.32 β = 90.00
c = 464.91 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-03-28
  • Released Date: 2017-06-28
  • Deposition author(s): Daumke, O., Schulte, K.W.

Revision History

  • 2017-07-19
    Type: Database references