5NFV

Crystal structure of catalytically inactive FnCas12 mutant bound to an R-loop structure containing a pre-crRNA mimic and full-length DNA target


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 5NFV

Classification: HYDROLASE

Total Structure Weight: 190495.05


Macromolecule Entities
Molecule Chains Length Organism Details
CRISPR-associated endonuclease Cpf1 A 1302 Francisella tularensis EC#: 3.1 IUBMB
Mutation: E1006Q, R1218A
Gene Name(s): cpf1 FTN_1397
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
pre-crRNA B 46 Synthetic construct 2'-deoxyU at position -19
DNA target strand C 38 Synthetic construct
DNA non-target strand D 38 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
B3P
Query on B3P

A 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)- PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3- DIOL
C11 H26 N2 O6
HHKZCCWKTZRCCL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.205
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 82.42 α = 90.00
b = 143.70 β = 94.16
c = 84.63 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-03-16
  • Released Date: 2017-06-14
  • Deposition author(s): Swarts, D.C., van der Oost, J., Jinek, M.

Revision History

No revisions since initial release