5MVL

Crystal structure of an A-DNA dodecamer containing 5-bromouracil


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.157

Literature

Macromolecules
Sequence Display for 5MVL

Classification: DNA

Total Structure Weight: 7480.83

Macromolecule Entities
Molecule Chains Length Organism Details
Brominated DNA dodecamer A, B 12 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
BRU
Query on BRU
A, B DNA LINKING C9 H12 Br N2 O8 P DU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.157
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 43.52 α = 90.00
b = 43.52 β = 90.00
c = 60.85 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-01-16
  • Released Date: 2017-05-10
  • Deposition author(s): Hardwick, J.S., Ptchelkine, D., Phillips, S.E.V., Brown, T.

Revision History

  • 2017-05-17
    Type: Database references
  • 2017-05-24
    Type: Database references
  • 2017-06-14
    Type: Database references
  • 2017-08-30
    Type: Author supporting evidence