5MRK

Structural basis of Zika virus methyltransferase inhibition by sinefungin

Structural Biology Knowledgebase: 5MRK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.227

Literature

Macromolecules
Sequence Display for 5MRK

Classification: TRANSFERASE

Total Structure Weight: 59456.64

Macromolecule Entities
Molecule Chains Length Organism Details
methyltransferase A, B 265 Zika virus Fragment: UNP residues 2521-2784
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SFG
Query on SFG

A, B SINEFUNGIN
ADENOSYL-ORNITHINE (Synonym)
C15 H23 N7 O5
LMXOHSDXUQEUSF-YECHIGJVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.227
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 144.84 α = 90.00
b = 52.01 β = 107.56
c = 84.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-12-23
  • Released Date: 2017-01-25
  • Deposition author(s): Hercik, K., Boura, E.

Revision History

No revisions since initial release