5MGA

Structure of the Cpf1 endonuclease R-loop complex after DNA cleavage


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.242

Literature

Macromolecules
Sequence Display for 5MGA

Classification: HYDROLASE

Total Structure Weight: 179330.73


Macromolecule Entities
Molecule Chains Length Organism Details
CRISPR-associated endonuclease Cpf1 A 1323 Francisella tularensis EC#: 3.1 IUBMB
Mutation: I246D, K467L, T842I
Gene Name(s): cpf1 FTN_1397
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (40-MER) B 40 Francisella tularensis
DNA (26-MER) C 26 Francisella tularensis
DNA (5'-D(P*CP*GP*TP*TP*AP*GP*AP*GP*AP*AP*GP*T)-3') D 12 Francisella tularensis

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.242
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 85.22 α = 90.00
b = 137.65 β = 90.00
c = 320.51 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-11-21
  • Released Date: 2017-06-21
  • Deposition author(s): Montoya, G., Stella, S.

Revision History

  • Version 1_0: 2017-06-21

    Type: Initial release

  • Version 1_1: 2017-06-28

    Type: Database references