5M3J

Influenza B polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.239

Literature

Macromolecules
Sequence Display for 5M3J

Classification: VIRAL PROTEIN

Total Structure Weight: 274970.19


Macromolecule Entities
Molecule Chains Length Organism Details
Polymerase acidic protein A 751 Influenza b virus Details: N-terminal His-tag C-terminal linker and TEV site
Gene Name(s): PA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RNA-directed RNA polymerase catalytic subunit B 772 Influenza b virus EC#: 2.7.7.48 IUBMB
Details: N-terminal linker C-terminal linker and TEV site
Gene Name(s): PB1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Polymerase basic protein 2 C 798 Influenza b virus Details: N-terminal linker C-terminal linker and TEV site
Gene Name(s): PB2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA-directed RNA polymerase subunit X 28 Homo sapiens EC#: 2.7.7.6 IUBMB
Details: Four heptad repeats of serine 5 phosphorylated Pol II CTD
Gene Name(s): POLR2A Gene View POLR2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*C)-3') R 14 Influenza b virus 3' end vRNA promoter
RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3') V 14 Influenza b virus 5' end vRNA promoter

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SEP
Query on SEP
X L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.239
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 200.16 α = 90.00
b = 200.16 β = 90.00
c = 250.38 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-10-14
  • Released Date: 2016-12-21
  • Deposition author(s): Lukarska, M., Pflug, A., Cusack, S.

Revision History

  • Version 1_0: 2016-12-21

    Type: Initial release

  • Version 1_1: 2017-01-11

    Type: Database references

  • Version 1_2: 2017-01-18

    Type: Database references