5M3H

Bat influenza A/H17N10 polymerase bound to four heptad repeats of serine 5 phosphorylated Pol II CTD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.210

Literature

Macromolecules
Sequence Display for 5M3H

Classification: TRANSFERASE

Total Structure Weight: 281102.50


Macromolecule Entities
Molecule Chains Length Organism Details
Polymerase acidic protein A 728 Influenza a virus Details: N-terminal linker C-terminal linker and TEV site
Gene Name(s): PA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RNA-directed RNA polymerase catalytic subunit B 776 Influenza a virus EC#: 2.7.7.48 IUBMB
Details: N-terminal linker C-terminal linker and TEV site
Gene Name(s): PB1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Polymerase basic protein 2 C 797 Influenza a virus Details: N-terminal linker C-terminal linker and STREP tag and TEV site
Gene Name(s): PB2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
TYR-SER-PRO-THR-SEP-PRO X, Y 28 Homo sapiens EC#: 2.7.7.6 IUBMB
Details: Synthetic peptide corresponding to 4 heptad repeats of serine 5 phosphorylated Pol II CTD
Gene Name(s): POLR2A Gene View POLR2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*U)-3') R 18 Influenza a virus 3 prime end of influenza vRNA promoter
RNA 5'-pAGUAGUAACAAGAGGG V 16 Influenza a virus 5 prime end of influenza vRNA promoter

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A, B, C PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SEP
Query on SEP
X, Y L-PEPTIDE LINKING C3 H8 N O6 P SER

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.210
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 269.49 α = 90.00
b = 147.52 β = 97.22
c = 88.48 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-10-14
  • Released Date: 2016-12-21
  • Deposition author(s): Lukarska, M., Pflug, A., Cusack, S.

Revision History

  • 2017-01-11
    Type: Database references
  • 2017-01-18
    Type: Database references