5M0I

Crystal structure of the nuclear complex with She2p and the ASH1 mRNA E3-localization element

Structural Biology Knowledgebase: 5M0I SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.41 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 5M0I

Classification: TRANSPORT PROTEIN

Total Structure Weight: 138890.91


Macromolecule Entities
Molecule Chains Length Organism Details
SWI5-dependent HO expression protein 2 A, B, C, D 246 Saccharomyces cerevisiae Mutation: C14S, C68S, C106S, C180S
Gene Name(s): SHE2 SCRG_03894
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
SWI5-dependent HO expression protein 3 H, I, J 24 Saccharomyces cerevisiae Gene Name(s): SHE3 YBR130C YBR1005
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
ASH1-E3 element, RNA (28-MER) E, F 28 Saccharomyces cerevisiae

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A, B, C, D, E 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

B, D, E, F ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, F MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.41 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.189
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 220.52 α = 90.00
b = 58.34 β = 126.98
c = 146.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-10-05
  • Released Date: 2017-01-18
  • Deposition author(s): Edelmann, F.T., Janowski, R., Niessing, D.

Revision History

  • 2017-02-15
    Type: Citation | Details: Citation
  • 2017-01-25
    Type: Citation | Details: Citation