5LFX

Lambda-[Ru(phen)2(dppz-11,12-Me)]2+ bound to a short substituted DNA sequence


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.56 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.144

Literature

Macromolecules
Sequence Display for 5LFX

Classification: DNA

Total Structure Weight: 3291.71

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*CP*CP*G)-3') A 4 Synthetic construct
DNA (5'-D(*(CBR)P*GP*GP*C)-3') C 4 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
9ZQ
Query on 9ZQ

A Ru(phen)2(dppz-11,12-Me2)
C44 H30 N8 Ru
SWTHIMQOVCZKDV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BA
Query on BA

A BARIUM ION
Ba
XDFCIPNJCBUZJN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5BT
Query on 5BT
C NON-POLYMER C9 H12 Br N3 O4 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.56 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.144
  • Space Group: P 64 2 2

Unit Cell:

Length (Å) Angle (°)
a = 67.72 α = 90.00
b = 67.72 β = 90.00
c = 35.85 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-07-04
  • Released Date: 2017-02-15
  • Deposition author(s): Hall, J.P., Cardin, C.J.

Revision History

  • Version 1_0: 2017-02-15

    Type: Initial release

  • Version 1_1: 2017-04-19

    Type: Database references

  • Version 1_2: 2017-08-30

    Type: Author supporting evidence