5LCM

STRUCTURE OF the RAD14 DNA-binding domain IN COMPLEX WITH N2-acetylaminonaphtyl- GUANINE CONTAINING DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.231

Literature

Macromolecules
Sequence Display for 5LCM

Classification: DNA BINDING PROTEIN

Total Structure Weight: 37925.36


Macromolecule Entities
Molecule Chains Length Organism Details
DNA repair protein RAD14 A, B 119 Saccharomyces cerevisiae Gene Name(s): RAD14 YMR201C YM8325.02C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*CP*TP*CP*TP*AP*CP*(AAN)P*TP*CP*AP*TP*CP*A)-3') C 15 Saccharomyces cerevisiae
DNA (5'-D(*GP*TP*GP*AP*TP*GP*AP*CP*GP*TP*AP*GP*AP*G)-3') D 15 Saccharomyces cerevisiae

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
6TW
Query on 6TW
C NON-POLYMER C22 H23 N6 O7 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.231
  • Space Group: P 41

Unit Cell:

Length (Å) Angle (°)
a = 53.04 α = 90.00
b = 53.04 β = 90.00
c = 131.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-06-22
  • Released Date: 2017-05-10
  • Deposition author(s): Schneider, S., Ebert, C., Simon, N., Carell, T.

Revision History

  • 2017-06-07
    Type: Database references
  • 2017-07-26
    Type: Database references