5L6F

Xylooligosaccharide oxidase from Myceliophthora thermophila C1 in complex with Xylobiose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.152

Literature

Macromolecules
Sequence Display for 5L6F

Classification: OXIDOREDUCTASE

Total Structure Weight: 57945.59

Macromolecule Entities
Molecule Chains Length Organism Details
FAD linked oxidase-like protein A 497 Thermothelomyces thermophila EC#: 1.1.3 IUBMB
Details: First 16 residues are a signal sequence
Gene Name(s): MYCTH_102971
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BXP
Query on BXP

A 4-O-beta-D-xylopyranosyl-beta-D-xylopyranose
XYLOBIOSE (Synonym)
C10 H18 O9
LGQKSQQRKHFMLI-SJYYZXOBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.184
  • R-Value Work: 0.152
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 123.59 α = 90.00
b = 59.23 β = 90.76
c = 68.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-05-30
  • Released Date: 2016-09-21
  • Deposition author(s): Rozeboom, H.J., Ferrari, A.R., Fraaije, M.W.

Revision History

  • Version 1_0: 2016-09-21

    Type: Initial release

  • Version 1_1: 2016-09-28

    Type: Database references

  • Version 1_2: 2016-11-16

    Type: Database references