5L4G

The human 26S proteasome at 3.9 A


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.9 Å
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 5L4G

Classification: HYDROLASE

Total Structure Weight: 1049264.88

Macromolecule Entities
Molecule Chains Length Organism Details
Proteasome subunit alpha type-6 A, N 246 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMA6 Gene View PROS27
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit alpha type-2 B, O 234 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMA2 Gene View HC3 PSC3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit alpha type-4 C, P 261 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMA4 Gene View HC9 PSC9
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit alpha type-7 D, Q 248 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMA7 Gene View HSPC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit alpha type-5 E, R 241 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMA5 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit alpha type-1 F, S 263 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMA1 Gene View HC2 NU PROS30 PSC2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit alpha type-3 G, T 255 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMA3 Gene View HC8 PSC8
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit beta type-1 1, U 241 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMB1 Gene View PSC5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit beta type-2 2, V 201 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMB2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit beta type-3 3, W 205 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMB3 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit beta type-4 4, X 264 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMB4 Gene View PROS26
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit beta type-5 5, Y 263 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMB5 Gene View LMPX MB1 X
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit beta type-6 6, Z 239 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMB6 Gene View LMPY Y
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Proteasome subunit beta type-7 7, 8 277 Homo sapiens EC#: 3.4.25.1 IUBMB
Gene Name(s): PSMB7 Gene View Z
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S protease regulatory subunit 7 H 433 Homo sapiens Gene Name(s): PSMC2 Gene View MSS1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S protease regulatory subunit 4 I 440 Homo sapiens Gene Name(s): PSMC1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S protease regulatory subunit 6B K 418 Homo sapiens Gene Name(s): PSMC4 Gene View MIP224 TBP7
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S protease regulatory subunit 10B L 389 Homo sapiens Gene Name(s): PSMC6 Gene View SUG2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S protease regulatory subunit 6A M 439 Homo sapiens Gene Name(s): PSMC3 Gene View TBP1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
26S protease regulatory subunit 8 J 406 Homo sapiens Gene Name(s): PSMC5 Gene View SUG1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

H, I, K, L, M ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ADP
Query on ADP

J ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

H, I, K, L, M MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.9 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2016-05-25
  • Released Date: 2016-09-07
  • Deposition author(s): Schweitzer, A., Aufderheide, A., Rudack, T., Beck, F.

Revision History

  • 2016-09-21
    Type: Citation | Details: Citation