5KX4

Structure of SALO


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.189 
  • R-Value Work: 0.165 
  • R-Value Observed: 0.167 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structure of SALO, a leishmaniasis vaccine candidate from the sand fly Lutzomyia longipalpis.

Asojo, O.A.Kelleher, A.Liu, Z.Pollet, J.Hudspeth, E.M.Rezende, W.C.Groen, M.J.Seid, C.A.Abdeladhim, M.Townsend, S.de Castro, W.Mendes-Sousa, A.Bartholomeu, D.C.Fujiwara, R.T.Bottazzi, M.E.Hotez, P.J.Zhan, B.Oliveira, F.Kamhawi, S.Valenzuela, J.G.

(2017) PLoS Negl Trop Dis 11: e0005374-e0005374

  • DOI: https://doi.org/10.1371/journal.pntd.0005374
  • Primary Citation of Related Structures:  
    5KX4

  • PubMed Abstract: 

    Immunity to the sand fly salivary protein SALO (Salivary Anticomplement of Lutzomyia longipalpis) protected hamsters against Leishmania infantum and L. braziliensis infection and, more recently, a vaccine combination of a genetically modified Leishmania with SALO conferred strong protection against L. donovani infection. Because of the importance of SALO as a potential component of a leishmaniasis vaccine, a plan to produce this recombinant protein for future scale manufacturing as well as knowledge of its structural characteristics are needed to move SALO forward for the clinical path. Recombinant SALO was expressed as a soluble secreted protein using Pichia pastoris, rSALO(P), with yields of 1g/L and >99% purity as assessed by SEC-MALS and SDS-PAGE. Unlike its native counterpart, rSALO(P) does not inhibit the classical pathway of complement; however, antibodies to rSALO(P) inhibit the anti-complement activity of sand fly salivary gland homogenate. Immunization with rSALO(P) produces a delayed type hypersensitivity response in C57BL/6 mice, suggesting rSALO(P) lacked anti-complement activity but retained its immunogenicity. The structure of rSALO(P) was solved by S-SAD at Cu-Kalpha to 1.94 Å and refined to Rfactor 17%. SALO is ~80% helical, has no appreciable structural similarities to any human protein, and has limited structural similarity in the C-terminus to members of insect odorant binding proteins. SALO has three predicted human CD4+ T cell epitopes on surface exposed helices. The results indicate that SALO as expressed and purified from P. pastoris is suitable for further scale-up, manufacturing, and testing. SALO has a novel structure, is not similar to any human proteins, is immunogenic in rodents, and does not have the anti-complement activity observed in the native salivary protein which are all important attributes to move this vaccine candidate forward to the clinical path.


  • Organizational Affiliation

    Sabin Vaccine Institute and Texas Children's Hospital Center for Vaccine Development, National School of Tropical Medicine, Baylor College of Medicine, Houston, Texas, United States of America.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
10.7 kDa salivary protein
A, B
101Lutzomyia longipalpisMutation(s): 0 
UniProt
Find proteins for Q5WPZ4 (Lutzomyia longipalpis)
Explore Q5WPZ4 
Go to UniProtKB:  Q5WPZ4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5WPZ4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.189 
  • R-Value Work: 0.165 
  • R-Value Observed: 0.167 
  • Space Group: P 42
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 65.28α = 90
b = 65.28β = 90
c = 39.31γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
iMOSFLMdata reduction
SCALAdata scaling
SHELXEmodel building

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Released Date: 2016-07-27 
  • Deposition Author(s): Asojo, O.A.
  • This entry supersedes: 4LU2

Revision History  (Full details and data files)

  • Version 1.0: 2016-07-27
    Type: Initial release
  • Version 1.1: 2016-08-10
    Changes: Database references, Structure summary
  • Version 1.2: 2017-07-05
    Changes: Database references
  • Version 1.3: 2017-11-22
    Changes: Refinement description