5KSD

Crystal Structure of a Plasma Membrane Proton Pump


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.324
  • R-Value Work: 0.287

Literature

Macromolecules
Sequence Display for 5KSD

Classification: TRANSPORT PROTEIN

Total Structure Weight: 184825.28

Macromolecule Entities
Molecule Chains Length Organism Details
ATPase 2, plasma membrane-type A, B 833 Arabidopsis thaliana EC#: 3.6.3.6 IUBMB
Gene Name(s): AHA2 At4g30190 F9N11.40
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LMT
Query on LMT

A, B DODECYL-BETA-D-MALTOSIDE
C24 H46 O11
NLEBIOOXCVAHBD-QKMCSOCLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACP
Query on ACP

A, B PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE (Synonym)
C11 H18 N5 O12 P3
UFZTZBNSLXELAL-IOSLPCCCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A, B POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.324
  • R-Value Work: 0.287
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 85.29 α = 90.00
b = 144.42 β = 90.00
c = 312.11 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-07-08
  • Released Date: 2016-08-10
  • Deposition author(s): Croll, T., Pedersen, B.P., Nissen, P.
  • Previous versions: 3B8C

Revision History

  • 2017-05-10
    Type: Database references
  • 2017-05-17
    Type: Database references