5KH3

Crystal structure of fragment (3-(5-Chloro-1,3-benzothiazol-2-yl)propanoic acid) bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.157

Literature

Macromolecules
Sequence Display for 5KH3

Classification: HYDROLASE

Total Structure Weight: 13220.84

Macromolecule Entities
Molecule Chains Length Organism Details
Histone deacetylase 6 A 107 Homo sapiens EC#: 3.5.1.98 IUBMB
Gene Name(s): HDAC6 Gene View KIAA0901 JM21
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
6U6
Query on 6U6

A 3-(5-chloranyl-1,3-benzothiazol-2-yl)propanoic acid
C10 H8 Cl N O2 S
UMBLVHSXXWQLDL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UNX
Query on UNX

A UNKNOWN ATOM OR ION
X
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 40.70 α = 90.00
b = 44.03 β = 90.00
c = 55.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-06-14
  • Released Date: 2016-07-27
  • Deposition author(s): Harding, R.J., Dong, A., Ravichandran, M., Ferreira de Freitas, R., Schapira, M., Bountra, C., Edwards, A.M., Santhakumar, V., Arrowsmith, C.M., Structural Genomics Consortium (SGC)

Revision History

  • Version 1_0: 2016-07-27

    Type: Initial release