5KEN

EBOV GP in complex with variable Fab domains of IgGs c4G7 and c13C6


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.3 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 5KEN

Classification: VIRAL PROTEIN / IMMUNE SYSTEM

Total Structure Weight: 258938.63

Macromolecule Entities
Molecule Chains Length Organism Details
Ebola surface glycoprotein, GP1 A, E, K 276 Zaire ebolavirus Gene Name(s): GP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Ebola surface glycoprotein, GP2 B, F, M 113 Zaire ebolavirus Mutation: I544T
Gene Name(s): GP
c4G7 variable Fab domain heavy chain C, G, N 118 Homo sapiens
c4G7 variable Fab domain light chain D, H, O 107 Homo sapiens
c13C6 variable Fab domain light chain I, P 107 Homo sapiens
c13C6 variable Fab domain heavy chain J, Q 121 Homo sapiens

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, E, F, K N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A, F, K ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A, F, K BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.3 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-06-09
  • Released Date: 2016-09-07
  • Deposition author(s): Pallesen, J., Murin, C.D., de Val, N., Cottrell, C.A., Hastie, K.M., Turner, H.L., Fusco, M.L., Flyak, A.I., Zeitlin, L., Crowe Jr., J.E., Andersen, K.G., Saphire, E.O., Ward, A.B.

Revision History

No revisions since initial release