5JK7

The X-ray structure of the DDB1-DCAF1-Vpr-UNG2 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.49 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 5JK7

Classification: Viral protein / DNA BINDING PROTEIN

Total Structure Weight: 410111.06

Macromolecule Entities
Molecule Chains Length Organism Details
DNA damage-binding protein 1 A, B 1140 Homo sapiens Gene Name(s): DDB1 Gene View XAP1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Protein VPRBP C, E 361 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: UNP residues 1045-1396
Gene Name(s): VPRBP DCAF1 Gene View KIAA0800 RIP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Uracil-DNA glycosylase D, G 222 Homo sapiens EC#: 3.2.2.27 IUBMB
Fragment: UNP residues 85-304
Gene Name(s): UNG Gene View DGU UNG1 UNG15
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Protein Vpr F, H 96 Human immunodeficiency virus 1 Gene Name(s): vpr
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.49 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.176
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 119.90 α = 75.11
b = 128.20 β = 89.44
c = 129.20 γ = 65.37

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-04-26
  • Released Date: 2016-10-05
  • Deposition author(s): Calero, G., Ahn, J., Wu, Y.

Revision History

  • Version 1_0: 2016-10-05

    Type: Initial release

  • Version 1_1: 2016-10-19

    Type: Database references

  • Version 1_2: 2017-09-13

    Type: Author supporting evidence, Derived calculations