5JGH

Crystal structure of the mitochondrial DNA packaging protein Abf2p in complex with DNA at 2.6 Angstrom resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.227

Literature

Macromolecules
Sequence Display for 5JGH

Classification: DNA BINDING PROTEIN

Total Structure Weight: 132034.69


Macromolecule Entities
Molecule Chains Length Organism Details
ARS-binding factor 2, mitochondrial A, D, G, J 163 Saccharomyces cerevisiae Gene Name(s): ABF2 HIM1 YMR072W YM9916.11
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*TP*TP*TP*AP*TP*TP*AP*TP*TP*TP*TP*AP*TP*AP*TP*TP*AP*TP*AP*TP*AP*A)-3') B, E, H, K 22 Saccharomyces cerevisiae
DNA (5'-D(*TP*TP*AP*TP*AP*TP*AP*AP*TP*AP*TP*AP*AP*AP*AP*TP*AP*AP*TP*AP*AP*A)-3') C, F, I, L 22 Saccharomyces cerevisiae

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACT
Query on ACT

G ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.227
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 71.99 α = 90.00
b = 131.99 β = 103.21
c = 71.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-04-20
  • Released Date: 2017-02-08
  • Deposition author(s): Chakraborty, A., Lyonnais, S., Sola, M.

Revision History

  • Version 1_0: 2017-02-08

    Type: Initial release

  • Version 1_1: 2017-09-13

    Type: Author supporting evidence, Derived calculations