5JDT

Structure of Spin-labelled T4 lysozyme mutant L118C-R1 at 100K


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.0 Å
  • R-Value Free: 0.130
  • R-Value Work: 0.115

Literature

Macromolecules
Sequence Display for 5JDT

Classification: HYDROLASE

Total Structure Weight: 19190.36

Macromolecule Entities
Molecule Chains Length Organism Details
Endolysin A 164 Enterobacteria phage t4 sensu lato EC#: 3.2.1.17 IUBMB
Mutation: R12G, C54T, C97A, L118C, I137R
Gene Name(s): E
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MTN
Query on MTN

A S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro- 1H-pyrrol-3-yl)methyl] methanesulfonothioate
MTSL (Synonym)
C10 H18 N O3 S2
MXZPGYFBZHBAQM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BME
Query on BME

A BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AZI
Query on AZI

A AZIDE ION
N3
IVRMZWNICZWHMI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.0 Å
  • R-Value Free: 0.130
  • R-Value Work: 0.115
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 60.28 α = 90.00
b = 60.28 β = 90.00
c = 96.97 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-04-17
  • Released Date: 2016-09-28
  • Deposition author(s): Loll, B., Consentius, P., Gohlke, U., Mueller, R., Kaupp, M., Heinemann, U., Wahl, M.C., Risse, T.

Revision History

  • Version 1_0: 2016-09-28

    Type: Initial release

  • Version 1_1: 2016-10-26

    Type: Database references