5J6Q

Cwp8 from Clostridium difficile

Structural Biology Knowledgebase: 5J6Q SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 5J6Q

Classification: CELL ADHESION

Total Structure Weight: 65620.65

Macromolecule Entities
Molecule Chains Length Organism Details
Cell wall binding protein cwp8 A 595 Clostridioides difficile Gene Name(s): cwp8 CD630_27990
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.229
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 45.45 α = 97.25
b = 63.43 β = 100.53
c = 86.41 γ = 91.96

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-04-05
  • Released Date: 2017-02-08
  • Deposition author(s): Renko, M., Usenik, A., Turk, D.

Revision History

  • 2017-03-22
    Type: Citation | Details: Citation
  • 2017-03-22
    Type: Data collection | Details: Data collection