5IX8

Crystal structure of sugar ABC transport system, substrate-binding protein from Bordetella parapertussis 12822


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.181
  • R-Value Work: 0.140

Literature

Macromolecules
Sequence Display for 5IX8

Classification: TRANSPORT PROTEIN

Total Structure Weight: 70866.59

Macromolecule Entities
Molecule Chains Length Organism Details
Putative sugar ABC transport system, substrate-binding protein A, B 321 Bordetella parapertussis Gene Name(s): BPP2773
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.181
  • R-Value Work: 0.140
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 59.56 α = 90.00
b = 78.72 β = 104.83
c = 66.89 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-03-23
  • Released Date: 2016-04-06
  • Deposition author(s): Chang, C., Cuff, M., Joachimiak, G., Clancy, S., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2016-08-17
    Type: Function and keywords | Details: Function and keywords