5IOB

Crystal structure of beta-N-acetylglucosaminidase-like protein from Corynebacterium glutamicum


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 5IOB

Classification: HYDROLASE

Total Structure Weight: 296463.06

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-glucosidase-related glycosidases A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 348 Corynebacterium glutamicum EC#: 3.2.1.52 IUBMB
Gene Name(s): Cgl2852
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MES
Query on MES

C, D, E, F 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

C, G SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, C, E, G GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

G CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E, F, G, H L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.209
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 308.08 α = 90.00
b = 91.36 β = 90.00
c = 120.02 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-03-08
  • Released Date: 2016-03-23
  • Deposition author(s): Chang, C., Mack, J., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2016-08-17
    Type: Function and keywords | Details: Function and keywords