5IO8

Salmonella Typhimurium VirG-like (STV) protein at 2.19 Angstrom resolution solved by Iodine SAD.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.19 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 5IO8

Classification: UNKNOWN FUNCTION

Total Structure Weight: 28576.54

Macromolecule Entities
Molecule Chains Length Organism Details
VirG-like protein A, B 116 Salmonella enterica Fragment: UNP residues 24-135
Details: First four residues GSHM are from vector.
Gene Name(s): sciZ SL1344_0303
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IOD
Query on IOD

A, B IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.19 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.204
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 60.12 α = 90.00
b = 60.28 β = 90.00
c = 62.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-03-08
  • Released Date: 2017-03-15
  • Deposition author(s): Pandey, N.K., Ray, S., Suar, M., Bhavesh, N.S.

Revision History

  • Version 1_0: 2017-03-15

    Type: Initial release