5IN3

Crystal structure of glucose-1-phosphate bound nucleotidylated human galactose-1-phosphate uridylyltransferase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 5IN3

Classification: TRANSFERASE

Total Structure Weight: 94994.99

Macromolecule Entities
Molecule Chains Length Organism Details
Galactose-1-phosphate uridylyltransferase A, B 401 Homo sapiens EC#: 2.7.7.12 IUBMB
Details: mutation N314D - common polymorphysim
Gene Name(s): GALT Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
H2U
Query on H2U

A, B 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
C9 H15 N2 O9 P
NBWDKGJHOHJBRJ-XVFCMESISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
G1P
Query on G1P

A, B ALPHA-D-GLUCOSE-1-PHOSPHATE
C6 H13 O9 P
HXXFSFRBOHSIMQ-VFUOTHLCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.198
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 59.76 α = 90.00
b = 107.99 β = 90.00
c = 126.42 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-03-07
  • Released Date: 2016-03-30
  • Deposition author(s): Kopec, J., McCorvie, T., Tallant, C., Velupillai, S., Shrestha, L., Fitzpatrick, F., Patel, D., Chalk, R., Burgess-Brown, N., von Delft, F., Arrowsmith, C., Edwards, A., Bountra, C., Yue, W.W.

Revision History

  • Version 1_0: 2016-03-30

    Type: Initial release

  • Version 1_1: 2016-09-14

    Type: Database references

  • Version 1_2: 2016-11-09

    Type: Database references

  • Version 1_3: 2017-08-30

    Type: Author supporting evidence