Download MendeleyA C69-family cysteine dipeptidase from Lactobacillus farciminis; substrate recognition mechanism and autoproteolytic mechanism in enzyme maturation
Kono, R., Watanabe, K.To be published.
5IMH
D31P mutant of C69-family cysteine dipeptidase from Lactobacillus farciminis
- PDB DOI: https://doi.org/10.2210/pdb5IMH/pdb
- Classification: HYDROLASE
- Organism(s): Companilactobacillus farciminis KCTC 3681 = DSM 20184
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2016-03-06 Released: 2017-03-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.47 Å
- R-Value Free: 0.240
- R-Value Work: 0.188
- R-Value Observed: 0.190
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Dipeptidase | 469 | Companilactobacillus farciminis KCTC 3681 = DSM 20184 | Mutation(s): 1 Gene Names: FC68_GL001211 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | H [auth A], I [auth A], J [auth A], O [auth C], P [auth C] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| ACT Query on ACT | L [auth B] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| CO Query on CO | F [auth A] G [auth A] K [auth B] M [auth C] N [auth C] | COBALT (II) ION Co XLJKHNWPARRRJB-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.47 Å
- R-Value Free: 0.240
- R-Value Work: 0.188
- R-Value Observed: 0.190
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 192.337 | α = 90 |
| b = 137.088 | β = 100.75 |
| c = 101.297 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data processing |
| HKL-2000 | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2017-03-15 Deposition Author(s): Kono, R., Watanabe, K.
Revision History (Full details and data files)
- Version 1.0: 2017-03-15
Type: Initial release - Version 1.1: 2019-11-20
Changes: Data collection, Derived calculations - Version 1.2: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description
