5IA0

Crystal Structure of Ephrin A2 (EphA2) Receptor Protein Kinase with alisertib (MLN8237)

Structural Biology Knowledgebase: 5IA0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 5IA0

Classification: TRANSFERASE

Total Structure Weight: 106186.65

Macromolecule Entities
Molecule Chains Length Organism Details
Ephrin type-A receptor 2 A, B, C 306 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: UNP residues 596-900
Details: Ligand ID UNL: unknown ligand alisertib EDO from cryo soaking
Gene Name(s): EPHA2 Gene View ECK
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
A5B
Query on A5B

A, B, C alisertib
C27 H20 Cl F N4 O4
ZLHFILGSQDJULK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B, C 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.194
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 57.03 α = 90.00
b = 90.15 β = 90.00
c = 200.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-02-21
  • Released Date: 2016-11-09
  • Deposition author(s): KUDLINZKI, D., LINHARD, V.L., GANDE, S.L., SREERAMULU, S., SAXENA, K., HEINZLMEIR, S., MEDARD, G., KUESTER, B., SCHWALBE, H.

Revision History

  • 2016-12-28
    Type: Citation | Details: Citation