5I8Q

S. cerevisiae Prp43 in complex with RNA and ADPNP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.2 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.260

Literature

Macromolecules
Sequence Display for 5I8Q

Classification: HYDROLASE

Total Structure Weight: 183072.23


Macromolecule Entities
Molecule Chains Length Organism Details
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 A, B 767 Saccharomyces cerevisiae EC#: 3.6.4.13 IUBMB
Gene Name(s): PRP43 YGL120C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') C 9 Saccharomyces cerevisiae
RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') F 13 Saccharomyces cerevisiae

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A, B PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.2 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.260
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 168.06 α = 90.00
b = 154.03 β = 90.00
c = 78.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-02-19
  • Released Date: 2017-02-01
  • Deposition author(s): He, Y., Nielsen, K.H., Andersen, G.R.

Revision History

No revisions since initial release