5I24

Crystal Structure of Agd31B, alpha-transglucosylase in Glycoside Hydrolase Family 31, in complex with Cyclophellitol Aziridine probe CF021


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.188
  • R-Value Work: 0.169

Literature

Macromolecules
Sequence Display for 5I24

Classification: HYDROLASE

Total Structure Weight: 95768.79

Macromolecule Entities
Molecule Chains Length Organism Details
Oligosaccharide 4-alpha-D-glucosyltransferase A 836 Cellvibrio japonicus EC#: 2.4.1.161 IUBMB
Gene Name(s): agd31B CJA_3248
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PG4
Query on PG4

A TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
66U
Query on 66U

A (1R,2S,3S,4R,5S,6R)-5-amino-6-(hydroxymethyl)cyclohexane- 1,2,3,4-tetrol
C7 H15 N O5
SWVTZDDSAFUTKS-DBTJYCMPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TRS
Query on TRS

A 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.188
  • R-Value Work: 0.169
  • Space Group: P 6 2 2

Unit Cell:

Length (Å) Angle (°)
a = 197.30 α = 90.00
b = 197.30 β = 90.00
c = 102.90 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-02-08
  • Released Date: 2016-05-04
  • Deposition author(s): Wu, L., Davies, G.J.

Revision History

  • Version 1_0: 2016-05-04

    Type: Initial release

  • Version 1_1: 2016-06-22

    Type: Database references