Download MendeleyStructural insights into a novel class of aspartate aminotransferase from Corynebacterium glutamicum
Son, H.-F., Kim, K.-J.To be published.
5HXX
Crystal structure of AspAT from Corynebacterium glutamicum
- PDB DOI: https://doi.org/10.2210/pdb5HXX/pdb
- Classification: TRANSFERASE
- Organism(s): Corynebacterium glutamicum ATCC 13032
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2016-01-31 Released: 2016-02-24
- Funding Organization(s): National Research Foundation of Korea
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.204
- R-Value Work: 0.155
- R-Value Observed: 0.157
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ASPARTATE AMINOTRANSFERASE | 432 | Corynebacterium glutamicum ATCC 13032 | Mutation(s): 0 Gene Names: aspB, cg0294 EC: 2.6.1.1 |  | |
UniProt | |||||
Find proteins for Q8NTR2 (Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025)) Explore Q8NTR2 Go to UniProtKB: Q8NTR2 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8NTR2 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PMP Query on PMP | C [auth A] | 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE C8 H13 N2 O5 P ZMJGSOSNSPKHNH-UHFFFAOYSA-N |  | ||
| PLP Query on PLP | F [auth B] | PYRIDOXAL-5'-PHOSPHATE C8 H10 N O6 P NGVDGCNFYWLIFO-UHFFFAOYSA-N |  | ||
| GLU Query on GLU | G [auth B] | GLUTAMIC ACID C5 H9 N O4 WHUUTDBJXJRKMK-VKHMYHEASA-N |  | ||
| AKG Query on AKG | D [auth A] | 2-OXOGLUTARIC ACID C5 H6 O5 KPGXRSRHYNQIFN-UHFFFAOYSA-N |  | ||
| GOL Query on GOL | E [auth A], H [auth B], I [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.204
- R-Value Work: 0.155
- R-Value Observed: 0.157
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 103.388 | α = 90 |
| b = 53.521 | β = 104.23 |
| c = 170.224 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data collection |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| HKL-2000 | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2016-02-24 Deposition Author(s): Son, H.-F., Kim, K.-J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Research Foundation of Korea | Korea, Republic Of | 2014R1A2A2A01005752 |
| National Research Foundation of Korea | Korea, Republic Of | 2014M1M2M2033626 |
| National Research Foundation of Korea | Korea, Republic Of | 2015H1A2A1034233 |
Revision History (Full details and data files)
- Version 1.0: 2016-02-24
Type: Initial release - Version 1.1: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description
