5HR9

The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1

Structural Biology Knowledgebase: 5HR9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.206

Literature

Macromolecules
Sequence Display for 5HR9

Classification: TRANSFERASE / DNA

Total Structure Weight: 59358.42


Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase beta-like protein A, B 178 African swine fever virus Mutation: L52M, L163M
Gene Name(s): O174L
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*GP*AP*CP*AP*AP*CP*GP*GP*GP*AP*CP*AP*AP*C)-3') C, F 15 Synthetic construct
DNA (5'-D(*GP*TP*TP*GP*TP*CP*C)-3') D, E, G, H 7 Synthetic construct

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.206
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 74.32 α = 90.00
b = 82.24 β = 90.00
c = 101.42 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-01-23
  • Released Date: 2017-01-18
  • Deposition author(s): Chen, Y.Q., Zhang, J., Gan, J.H.

Revision History

No revisions since initial release