5HJ3

Crystal structure of host-primed Ebola virus GP, GPcl.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.227

Literature

Macromolecules
Sequence Display for 5HJ3

Classification: VIRAL PROTEIN / IMMUNE SYSTEM

Total Structure Weight: 336801.09

Macromolecule Entities
Molecule Chains Length Organism Details
Envelope glycoprotein C, G, K, O 179 Ebola virus sp. Fragment: UNP residues 32-194
Gene Name(s): GP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Envelope glycoprotein D, H, L, P 136 Zaire ebolavirus Fragment: UNP residues 502-637
Gene Name(s): GP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
KZ52 Antibody Fragment A, E, I, M 226 Homo sapiens
KZ52 Antibody Fragment B, F, J, N 217 Homo sapiens

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

D, H, L, P N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

D, H, L, P ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

D, H, L, P BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.227
  • Space Group: H 3

Unit Cell:

Length (Å) Angle (°)
a = 193.10 α = 90.00
b = 193.10 β = 90.00
c = 350.32 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-01-12
  • Released Date: 2016-03-09
  • Deposition author(s): Bornholdt, Z.A., Fusco, M.L., Saphire, E.O.

Revision History

  • 2016-05-04
    Type: Database references