5HHU

Plasmodium vivax hypoxanthine-guanine phosphoribosyltransferase in complex with [3R,4R]-4-guanin-9-yl-3-((S)-2-hydroxy-2-phosphonoethyl)oxy-1-N-(phosphonopropionyl)pyrrolidine

Structural Biology Knowledgebase: 5HHU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 5HHU

Classification: TRANSFERASE

Total Structure Weight: 339094.00

Macromolecule Entities
Molecule Chains Length Organism Details
Hypoxanthine-guanine-xanthine phosphoribosyltransferase A, B, C..., D, E, F, G, H, I, J, K, LA, B, C, D, E, F, G, H, I, J, K, L 238 Plasmodium vivax Gene Name(s): PVIIG_02072
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
YPG
Query on YPG

A, B, C, D, E, F, G, H, I, J, K, L [3-[(3~{R},4~{R})-3-(2-azanyl-6-oxidanylidene- 1~{H}-purin-9-yl)-4-[(2~{S})-2-oxidanyl-2- phosphono-ethoxy]pyrrolidin-1-yl]-3-oxidanylidene- propyl]phosphonic acid
[3R,4R]-4-guanin-9-yl-3-((S)-2-hydroxy-2- phosphonoethyl)oxy-1-N-(phosphonopropionyl)pyrrolidine (Synonym)
C14 H22 N6 O10 P2
RBYFDIJTTUISNF-MRTMQBJTSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, E, F, G, H, I, J, K, L MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.05 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.188
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 219.83 α = 90.00
b = 254.23 β = 90.00
c = 55.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-01-11
  • Released Date: 2017-01-18
  • Deposition author(s): Guddat, L.W., Keough, D.T., Rejman, D.

Revision History

No revisions since initial release