5HHH

Structure of human DNA polymerase beta Host-Guest complexed with the control G for N7-CBZ-platination

Structural Biology Knowledgebase: 5HHH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.36 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.213

Literature

Macromolecules
Sequence Display for 5HHH

Classification: TRANSFERASE LYASE / DNA

Total Structure Weight: 46823.70


Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase beta A 327 Homo sapiens EC#: 2.7.7.7 IUBMB 4.2.99 IUBMB
Gene Name(s): POLB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*AP*GP*GP*AP*GP*CP*AP*GP*G)-3') T 16 Synthetic construct
DNA (5'-D(P*CP*CP*TP*GP*CP*TP*CP*CP*TP*C)-3') P 10 Synthetic construct
DNA (5'-D(P*GP*TP*CP*GP*G)-3') D 5 Synthetic construct

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.36 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.213
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 51.33 α = 90.00
b = 84.60 β = 107.49
c = 55.52 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-01-11
  • Released Date: 2017-01-18
  • Deposition author(s): Koag, M.-C., Lee, S.

Revision History

No revisions since initial release