5H37

Cryo-EM structure of zika virus complexed with Fab C10 at pH 8.0


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.0 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 5H37

Classification: VIRUS / IMMUNE SYSTEM

Total Structure Weight: 266400.28

Macromolecule Entities
Molecule Chains Length Organism Details
structural protein E A, B, C 504 Zika virus Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
strutural protein M D, E, F 75 Zika virus Gene Name(s):
C10 IgG heavy chain variable region G, I, K 127 Homo sapiens
C10 IgG light chain variable region H, L, M 109 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.0 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-10-20
  • Released Date: 2016-11-30
  • Deposition author(s): Zhang, S., Kostyuchenko, V., Ng, T.-S., Lim, X.-N., Ooi, J.S.G., Lambert, S., Tan, T.Y., Widman, D., Shi, J., Baric, R.S., Lok, S.-M.

Revision History

  • Version 1_0: 2016-11-30

    Type: Initial release

  • Version 1_1: 2017-01-25

    Type: Database references