5GSK

Crystal structure of duplex DNA3 in complex with Hg(II) and Sr(II)

Structural Biology Knowledgebase: 5GSK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.05 Å
  • R-Value Free: 0.156
  • R-Value Work: 0.140

Literature

Macromolecules
Sequence Display for 5GSK

Classification: DNA

Total Structure Weight: 2706.80

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*GP*TP*CP*GP*TP*CP*C)-3') A 8 Unidentified

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HG
Query on HG

A MERCURY (II) ION
Hg
BQPIGGFYSBELGY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SR
Query on SR

A STRONTIUM ION
Sr
PWYYWQHXAPXYMF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.05 Å
  • R-Value Free: 0.156
  • R-Value Work: 0.140
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 40.32 α = 90.00
b = 40.32 β = 90.00
c = 24.98 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2016-08-16
  • Released Date: 2017-02-08
  • Deposition author(s): Liu, H.H., Wang, R., Yao, Q.Q., Cheng, Y.Q., Yang, C., Luo, Q., Wu, B.X., Li, J.X., Ma, J.B., Sheng, J., Gan, J.H.

Revision History

No revisions since initial release